The "Plugin API" is simply irrelevant. Mark's post does covered that in detail. It's complicated and confusing, but ultimately, arbitrarily defining the boundary of a program as where an API exists is, in the end, just that: arbitrary. There's lots of other points that make the Plugin API argument irrelevant, but I'll skip those here.
What is the "disparity between the FSF's interpretation of definition of 'derivative work' and how actual copyright law (and precedent case law) have defined 'derivative work'?" besides one covering software, and the other traditional writing? I'm actually interested.
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